Bio::Das::ProServer::SourceAdaptor::simple
$Revision: 687 $
Builds das from parser genesat tab-delimited flat files of the form:
gene.name gene.id
$oSourceAdaptor->init();
my @aFeatures = $oSourceAdaptor->build_features({ 'segment' => $sSegmentId, 'start' => $iSegmentStart, # Optional 'end' => $iSegmentEnd, # Optional }); my @aFeatures = $oSourceAdaptor->build_features({ 'feature_id' => $sFeatureId, });
Overrides the superclass method to return a hardcoded XML DAS stylesheet.
Returns a list of all segment identifiers in the file.
Bio::Das::ProServer::SourceAdaptor Carp POSIX
Andy Jenkinson <andy.jenkinson@ebi.ac.uk>
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
To install Bio::Das::ProServer, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Das::ProServer
CPAN shell
perl -MCPAN -e shell install Bio::Das::ProServer
For more information on module installation, please visit the detailed CPAN module installation guide.