Bio::Das::ProServer::SourceAdaptor::simpledb - Builds simple DAS features from a database
$LastChangedRevision: 687 $
Build simple segment:start:stop features from a basic database table structure: segmentid,featureid,start,end,type,note,link
my @aFeatures = $oSourceAdaptor->build_features({ segment => $sSegmentId, start => $iSegmentStart, # Optional end => $iSegmentEnd, # Optional dsn => $sDSN, # if used as part of a hydra }); =head1 DIAGNOSTICS
[mysource] adaptor = simpledb transport = dbi dbhost = mysql.example.com dbport = 3308 dbname = proserver dbuser = proserverro dbpass = topsecret dbtable = mytable Or for SourceHydra use: [mysimplehydra] adaptor = simpledb # SourceAdaptor to clone hydra = dbi # Hydra implementation to use transport = dbi basename = hydra # dbi: basename for db tables containing servable data dbname = proserver dbhost = mysql.example.com dbuser = proserverro dbpass = topscret
Bio::Das::ProServer::SourceAdaptor
$Author: Roger M Pettett$
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
To install Bio::Das::ProServer, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Das::ProServer
CPAN shell
perl -MCPAN -e shell install Bio::Das::ProServer
For more information on module installation, please visit the detailed CPAN module installation guide.