Bio::KEGG - Perl module to fetch details parsed by Bio::KEGGI.
my $keggi = Bio::KEGGI->new( -file => 'keggfilename', -type => 'ko', ); while (my $kegg = $keggi->next_rec) { print $kegg->id; }
This module is used to fetch details from object created by Bio::KEGGI. Create a new Bio::KEGG object is not supported. For more details for different input files, please refer to documents of L<Bio::KEGG::genome>, L<Bio::KEGG::ko>, L<Bio::KEGG::pathway> and L<Bio::KEGG::gene>.
Haizhou Liu, zeroliu-at-gmail-dot-com
0.1.5
Name: id Desc: Get KEGG entry id Usage: $acc = $o_kegg->id() Args: Return: A string
Name: name Desc: Get KEGG entry NAME. Usage: $name = $o_kegg->name() Args: Return: A string
Name: desc Desc: Get KEGG entry DEFINITION information. Usage: $desc = $o_kegg->desc() Args: Return: A string
Name: ec Desc: Get KEGG EC information. Usage: $ra_ec = $o_kegg->ec() Args: Retuen: A reference to an array
Name: disease Desc: Get KEGG entry DISEASE information. $ra_disease = [ $disease_id, ... ]; Usage: $rh_diseases = $o_kegg->disease() Args: Return: A reference to an array.
Name: pmid Disc: Get KEGG entry PUBMED ids. $ra_pmid = [ $pmid, ... ]; Usage: $o_kegg->pmids() Args: Return: A reference to an array.
Name: module Disc: Get KEGG entry MODULE ids $ra_module = [ $module_id, ... ]; Usage: $o_kegg->module() Args: Return: A reference to an array
Name: class Disc: Get KEGG entry CLASS information $ra_class = [ $class, ... ]; Usage: $o_kegg->class() Args: Return: A reference to an array
Name: pathway Disc: Get KEGG entry PATHWAY ids $ra_pathways = [ pathway_id, ... ]; Usage: $o_kegg->pathway() Args: Return: A reference to an array.
Name: dblink Disc: Get KEGG entry DBLINKS information $rh_dblink = [ { 'db' => $db, 'entry' => [ entry, ... ], }, ... ]; Usage: $o_kegg->dblink() Args: Return: A reference to a hash.
To install Bio::KEGGI, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::KEGGI
CPAN shell
perl -MCPAN -e shell install Bio::KEGGI
For more information on module installation, please visit the detailed CPAN module installation guide.