Bio::Phylo::Parsers::Nexml - Parser used by Bio::Phylo::IO, no serviceable parts inside
This module parses nexml data. It is called by the Bio::Phylo::IO facade, don't call it directly. In addition to parsing from files, handles or strings (which are specified by the -file, -handle and -string arguments) this parser can also parse xml directly from a url (-url => $phylows_output), provided you have LWP installed.
There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.
The nexml parser is called by the Bio::Phylo::IO object. Look there to learn how to parse nexml (or any other data Bio::Phylo supports).
Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com.
For more information about the nexml data standard, visit http://www.nexml.org
If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63
To install Bio::Phylo, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Phylo
CPAN shell
perl -MCPAN -e shell install Bio::Phylo
For more information on module installation, please visit the detailed CPAN module installation guide.