Bio::ViennaNGS::ExtFeature - A Moose wrapper for extended BED6-type genomic intervals.
use Bio::ViennaNGS::ExtFeature; my $expression = Bio::ViennaNGS::Feature->new(chromosome => "chr1", start => "1200", end => "4300", strand => "+", name => "foobar", score => "100", extension => "34:x:36 100:200", );
This module provides an object-oriented interface for storing extended genomic intervals characterized via chromosome, start position, end position, name, score, strand as well as an arbitrary string. As such, it can be regarded a simple wrapper for extended BED6 elements.
This class inherits from Bio::ViennaNGS::Feature.
Michael T. Wolfinger <michael@wolfinger.eu>
Copyright (C) 2014-2017 Michael T. Wolfinger <michael@wolfinger.eu>
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.0 or, at your option, any later version of Perl 5 you may have available.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
To install Bio::ViennaNGS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::ViennaNGS
CPAN shell
perl -MCPAN -e shell install Bio::ViennaNGS
For more information on module installation, please visit the detailed CPAN module installation guide.