kmer_analysis.pl - Simple k-mer count analysis of fasta or fastq files
kmer_analysis.pl [-f FILE] [-d STRING] [-o STRING] [-k INTEGER] [-t STRING] [options]
This program counts k-mers of user defined length in fasta or fastq files.
File for processing
Working directory
Output directory
Kmer length to search
File type, can either be fasta or fastq
Print short help
Prints the manual page and exits
Joerg Fallmann <joerg.fallmann@univie.ac.at>
To install Bio::ViennaNGS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::ViennaNGS
CPAN shell
perl -MCPAN -e shell install Bio::ViennaNGS
For more information on module installation, please visit the detailed CPAN module installation guide.