Bio::Network::IO::psi::intact - module to handle variations in PSI MI format from the IntAct database
Do not use this module directly, use Bio::Network::IO. For example:
my $io = Bio::Network::IO->new(-format => 'psi', -source => 'intact', -file => 'data.xml'); my $network = $io->next_network;
There are slight differences between PSI MI files offered by various public databases. The Bio::Network::IO::psi* modules have methods for handling these variations. To load a module like this use the optional "-source" argument when creating a new Bio::Network::IO object.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
Brian Osborne bosborne at alum.mit.edu
To install Bio::Network::IO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Network::IO
CPAN shell
perl -MCPAN -e shell install Bio::Network::IO
For more information on module installation, please visit the detailed CPAN module installation guide.