uf-params - list or dump the ScanParameters records in a Finnigan raw file
uf-params [options] file
Options: -header extract the log header (record structure) -d[ump] dump the requested feature showing file seek addresses -a[ll] detailed dump of all field descriptors [requires: -d] -s[ize] print record size [requires: -d] -n[unmber] <n:0+n> extract the log entry number <n> -h[tml] format as html -w[iki] format as a wiki table -r[elative] show relative addersess in the dump [requires: -d] <file> input file [required]
Print a brief help message and exit.
Prints a table listing all fields in the requested object (a log entry or the file header), with their seek addresses, sizes, names and values. Individual entries can be selected with the -n[umber] option.
Gives the number of a single InstrumentLogRecord to extract
Format the dump output as an html table. When multiple entries are specified, each will be rendered in its own table
Format the dump output as a wiki table.
Show structure size in bytes (works with the -d[ump] option).
Show relative addresses of all itmes in the dump. The default is to show the absolute seek address. (works with the -d[ump] option)
Dump all GenericDataDescriptor entries in the file header (requires -header)
uf-params can be used to examine the ScanParameters? records in a Finnigan raw file. These records contain a miscellany of data pertaining to a single scan: ion injection time, retention time, charge state and M/z of the precursor ion, M/z conversion coefficients, and other data.
Finnigan::ScanParameters
uf-params sample.raw
uf-params -n 5 sample.raw
uf-params -dswr -n 5 sample.raw
uf-params -header sample.raw
uf-params -header -dw sample.raw
uf-params -header -daw sample.raw
To install Finnigan, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Finnigan
CPAN shell
perl -MCPAN -e shell install Finnigan
For more information on module installation, please visit the detailed CPAN module installation guide.