Webservice::InterMine::Bio - Access data from InterMine queries in biological formats.
Version 0.9802
This module provides roles that can be used to access data in standard biological formats, and even interface directly with BioPerl classes.
use Webservice::InterMine::Bio qw/GFF3/; use Webservice::InterMine 'flymine'; my $query = Webservice::InterMine->new_query(with => GFF3); $query->add_sequence_features("Gene", "Gene.exons", "Gene.transcripts"); my $feature_store = $query->get_feature_store(); # Get a Bio::DB::SeqFeature::Store ...
This module exports (optionally) constants that simplify references to the roles in this package, by providing means to name these roles in the manner expected by new_query. So:
new_query
GFF3 => ['Webservice::InterMine::Bio::GFFQuery']
FASTA => ['Webservice::InterMine::Bio::FastaQuery']
BED => ['Webservice::InterMine::Bio::BEDQuery']
Alex Kalderimis, <dev at intermine.org>
<dev at intermine.org>
Please report any bugs or feature requests to bug-webservice-intermine-bio at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Webservice-InterMine-Bio. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
bug-webservice-intermine-bio at rt.cpan.org
You can find documentation for this module with the perldoc command.
perldoc Webservice::InterMine::Bio
You can also look for information at:
RT: CPAN's request tracker
http://rt.cpan.org/NoAuth/Bugs.html?Dist=Webservice-InterMine-Bio
AnnoCPAN: Annotated CPAN documentation
http://annocpan.org/dist/Webservice-InterMine-Bio
CPAN Ratings
http://cpanratings.perl.org/d/Webservice-InterMine-Bio
Search CPAN
http://search.cpan.org/dist/Webservice-InterMine-Bio/
The funding bodies that support InterMine:
The Wellcome Trust http://www.wellcome.ac.uk/
The NIH/NHGRI http://www.nih.gov/
Copyright 2011 Alex Kalderimis.
This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License.
See http://dev.perl.org/licenses/ for more information.
To install Webservice::InterMine::Bio, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Webservice::InterMine::Bio
CPAN shell
perl -MCPAN -e shell install Webservice::InterMine::Bio
For more information on module installation, please visit the detailed CPAN module installation guide.