The Perl Toolchain Summit needs more sponsors. If your company depends on Perl, please support this very important event.

Changes for version 1.38

  • Add -lpthread to linker flags to allow to run with samtools 0.1.19.

Modules

Add high-level methods to Bio::DB::Bam::Alignment
The SAM/BAM alignment object
Object passed to pileup() callback
Add high-level methods to Bio::DB::Bam::Pileup
Object representing the query portion of a BAM/SAM alignment
Object representing the query portion of a BAM/SAM alignment in NATIVE alignment
Read SAM/BAM database files
Constants for use with SAM/BAM

Provides

in lib/Bio/DB/Sam.pm
in lib/Bio/DB/Bam/FetchIterator.pm
in lib/Bio/DB/Bam/ReadIterator.pm
in lib/Bio/DB/Bam/AlignWrapper.pm
in lib/Bio/DB/Sam.pm
in lib/Bio/DB/Sam/SamToGBrowse.pm
in lib/Bio/DB/Sam/Segment.pm
in lib/Bio/DB/Sam/Segment.pm
in lib/Bio/DB/Sam.pm