GPL-LICENSE
LICENSE
MANIFEST
META.yml
Makefile.PL
README
bin/annotate_bacteria
bin/gene_name_occurances
bin/parse_genes_from_gffs
dist.ini
lib/Bio/AutomatedAnnotation.pm
lib/Bio/AutomatedAnnotation/CommandLine/AnnotateBacteria.pm
lib/Bio/AutomatedAnnotation/CommandLine/GeneNameOccurances.pm
lib/Bio/AutomatedAnnotation/CommandLine/ParseGenesFromGFFs.pm
lib/Bio/AutomatedAnnotation/Exceptions.pm
lib/Bio/AutomatedAnnotation/External/Cmscan.pm
lib/Bio/AutomatedAnnotation/GeneNameOccurances.pm
lib/Bio/AutomatedAnnotation/GeneNamesFromGFF.pm
lib/Bio/AutomatedAnnotation/ParseGenesFromGFF.pm
lib/Bio/AutomatedAnnotation/ParseGenesFromGFFs.pm
lib/Bio/AutomatedAnnotation/Prokka.pm
lib/Bio/AutomatedAnnotation/SpreadsheetOfGeneOccurances.pm
lib/Bio/AutomatedAnnotation/notes
t/Bio/AutomatedAnnotation.t
t/Bio/AutomatedAnnotation/CommandLine/GeneNameOccurances.t
t/Bio/AutomatedAnnotation/CommandLine/ParseGenesFromGFFs.t
t/Bio/AutomatedAnnotation/External/Cmscan.t
t/Bio/AutomatedAnnotation/GeneNameOccurances.t
t/Bio/AutomatedAnnotation/GeneNamesFromGFF.t
t/Bio/AutomatedAnnotation/ParseGenesFromGFF.t
t/Bio/AutomatedAnnotation/ParseGenesFromGFFs.t
t/Bio/AutomatedAnnotation/Prokka.t
t/Bio/AutomatedAnnotation/SpreadsheetOfGeneOccurances.t
t/bin/dummy_cmscan
t/data/cmscan_output.txt
t/data/copy_of_example_annotation.gff
t/data/different_to_example_annotation.gff
t/data/empty_annotation.gff
t/data/example_annotation.gff
t/data/expected_aa_output.yfnB.fa
t/data/expected_example.csv
t/data/expected_gene_occurances_output_all_files.csv
t/data/expected_gene_occurances_output_one_file.csv
t/data/expected_gene_occurances_output_two_files.csv
t/data/expected_output.16SribosomalRNA.fa
t/data/expected_output.hypothetical.fa
t/data/expected_output.yfnB.fa
t/data/minimal_contigs.fa
t/lib/TestHelper.pm
t/requires_external.t