PDL::FFTW3 - PDL interface to the Fastest Fourier Transform in the West v3
This is a PDL binding to version 3 of the FFTW library. Supported are complex <-> complex and real <-> complex FFTs.
use PDL; use PDL::FFTW3; use PDL::Graphics::Gnuplot; use PDL::Complex; # Basic functionality my $x = sin( sequence(100) * 2.0 ) + 2.0 * cos( sequence(100) / 3.0 ); my $F = rfft1( $x ); gplot( with => 'lines', inner($F,$F)); =====> 8000 ++------------+-------------+------------+-------------+------------++ + + + + + + | | | * | 7000 ++ * ++ | * | | * | | * | | * | 6000 ++ * ++ | * | | * | | * | 5000 ++ * ++ | * | | * | | ** | 4000 ++ ** ++ | ** | | * * | | * * | | * * | 3000 ++ * * ++ | * * | | * * | | * * * | 2000 ++ * * * ++ | * * * | | * * ** | | * * ** | | * * ** | 1000 ++ * * * * ++ | * * * * | | ** * * * | + * * + + + * * + + 0 ****-------*********************************--************************ 0 10 20 30 40 50 # Correlation of two real signals # two signals offset by 30 units my $x = sequence(100); my $y1 = exp( 0.2*($x - 20.5) ** (-2.0) ); my $y2 = exp( 0.2*($x - 50.5) ** (-2.0) ); # compute the correlation my $F12 = rfft1( cat($y1,$y2) ); my $corr = irfft1( Cmul( $F12(:,:,(1)), Cconj $F12(:,:,(0)) ) ); # and find the peak say maximum_ind($corr); =====> 30
This module computes the Discrete Fourier Transform. In its most basic form, this transform converts a vector of complex numbers in the time domain into another vector of complex numbers in the frequency domain. These complex <-> complex transforms are supported with fftN functions for a rank-N transform. The opposite effect (transform data in the frequency domain back to the time domain) can be achieved with the ifftN functions.
fftN
N
ifftN
A common use case is to transform purely-real data. This data has 0 for its complex component, and FFTW can take advantage of this to compute the FFT faster and using less memory. Since a Fourier Transform of a real signal has an even real part and an odd imaginary part, only 1/2 of the spectrum is needed. These forward real -> complex transforms are supported with the rfftN functions. The backward version of this transform is complex -> real and is supported with the irfftN functions.
rfftN
irfftN
Arbitrary N-dimensional transforms are supported. All functions exported by this module have the N in their name, so for instance a complex <-> complex 3D forward transform is computed with the fft3 function. The rank must always be specified in this way; there is no function called simply fft.
fft3
fft
In-place operation is supported for complex <-> complex functions, but not the real ones (real function don't have mathing dimensionality of the input and output). An in-place transform of $x can be computed with
$x
fft1( $x->inplace );
All the functions in this module support PDL threading. For instance, if we have 4 different image piddles $a, $b, $c, $d and we want to compute their 2D FFTs at the same time, we can say
$a
$b
$c
$d
my $ABCD_transformed = rfft2( PDL::cat( $a, $b, $c, $d) );
This takes advantage of PDL's automatic parallelization, if appropriate (See PDL::ParallelCPU).
FFTW supports single and double-precision floating point numbers directly. If possible, the PDL input will be used as-is. If not, a type conversion will be made to use the lowest-common type. So as an example, the following will perform a single-precision floating point transform (and return data of that type).
fft1( $x->byte )
This module expects complex numbers to be stored as a (real,imag) pair in the first dimension of a piddle. Thus in a complex piddle $x, it is expected that $x->dim(0) == 2 (this module verifies this before proceeding).
$x->dim(0) == 2
Generally, the sizes of the input and the output must match. This is completely true for the complex <-> complex transforms: the output will have the same size and the input, and an error will result if this isn't possible for some reason.
This is a little bit more involved for the real <-> complex transforms. If I'm transforming a real 3D vector of dimensions K,L,M, I will get an output of dimensions 2,int(K/2)+1,L,M. The leading 2 is there because the output is complex; the K/2 is there because the input was real. The first dimension is always the one that gets the K/2. This is described in detail in section 2.4 of the FFTW manual.
K,L,M
2,int(K/2)+1,L,M
K/2
Note that given a real input, the dimensionality of the complex transformed output is unambiguous. However, this is not true for the backward transform. For instance, a 1D inverse transform of a vector of 10 complex numbers can produce real output of either 18 or 19 elements (because int(18/2)+1 == 10 and int(19/2)+1 == 10).
int(18/2)+1 == 10
int(19/2)+1 == 10
Without any extra information this module assumes the even-sized input.
Thus irfft1( sequence(2,10) )->dim(0) == 18 is true. If we want the odd-sized output, we have to explicitly pass this into the function like this:
irfft1( sequence(2,10) )->dim(0) == 18
irfft1( sequence(2,10), zeros(19) )
Here I create a new output piddle with the zeros function; irfft1 then fills in this piddle with the result of the computation. This module validates all of its input, so only 18 and 19 are valid here. An error will be thrown if you try to pass in zeros(20).
zeros
irfft1
zeros(20)
This all means that the following will produce surprising results if $x->dim(0) isn't even
$x->dim(0)
irfft1( rfft1( $x ) )
Following the widest-used convention for discrete Fourier transforms, this module normalizes the inverse transform (but not the forward transform) by dividing by the number of elements in the data set, so that
ifft1( fft1( $x ) )
is a slow approximate no-op, if $x is well-behaved.
This is different from the behavior of the underlying FFTW3 library itself, but more consistent with other FFT packages for popular analysis languages including PDL.
The basic complex <-> complex FFT. You can pass in the rank as a parameter with the fftn form, or append the rank to the function name for ranks up to 9. These functions all take one input piddle and one output piddle. The dimensions of the input and the output are identical. The output parameter is optional and, if present, must be the last argument. If the output piddle is passed in, the user must make sure the dimensions match.
fftn
The 0 dim of the input PDL must have size 2 and run over (real,imaginary) components. The transform is carried out over dims 1 through N.
The fftn form takes a minimum of two arguments: the PDL to transform, and the number of dimensions to transform as a separate argument.
The following are equivalent:
$X = fftn( $x, 1 ); $X = fft1( $x ); fft1( $x, my $X = $x->zeros );
The basic, properly normalized, complex <-> complex backward FFT. Everything is exactly like in the fftN functions, except the inverse transform is computed and normalized, so that (for example)
ifft1( fft1 ( $x ) )
is a good approximation of $x itself.
The real -> complex FFT. You can pass in the rank with the rfftn form, or append the rank to the function name for ranks up to 9. These functions all take one input piddle and one output piddle. The dimensions of the input and the output are not identical, but are related as described in "Data formats". The output can be passed in as the last argument, if desired. If the output piddle is passed in, the user must make sure the dimensions match.
rfftn
In the rfftn form, the rank is the second argument.
$X = rfftn( $x, 1 ); $X = rfft1( $x ); rfft1( $x, my $X = $x->zeroes );
The complex -> real inverse FFT. You can pass in the rank with the irfftn form, or append the rank to the function name for ranks up to 9. Argument passing and interpretation is as described in rfftN above. Please read "Data formats" for details about dimension interpretation. There's an ambiguity about the output dimensionality, which is described in that section.
irfftn
Dima Kogan, <dima@secretsauce.net>; contributions from Craig DeForest, <craig@deforest.org>.
<dima@secretsauce.net>
<craig@deforest.org>
Early working version in github
Copyright 2013 Dima Kogan and Craig DeForest.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License.
To install PDL::FFTW3, copy and paste the appropriate command in to your terminal.
cpanm
cpanm PDL::FFTW3
CPAN shell
perl -MCPAN -e shell install PDL::FFTW3
For more information on module installation, please visit the detailed CPAN module installation guide.