TAIR::GeneDescriptions - Automatically download gene descriptions using locus identifiers (AGI codes) or gene names.
Version 1.00
Automatically download gene descriptions using locus identifiers (AGI codes) or gene names. (http://www.arabidopsis.org/tools/bulk/genes/index.jsp)
use TAIR::GeneDescriptions; my $TB = TAIR::GeneDescriptions->new(); my $verbose = "1"; my $input_file = "input_file.txt"; my $output_file = "output_file.txt"; my ($input_file_hn); open($input_file_hn, "<", $input_file) or die("Cannot open $input_file for reading: $!"); while (<$input_file_hn>) { chomp; my $query = $_; $TB->connect($query,$verbose); } $TB->write($output_file);
Object-oriented master-hash!
Parameters, do not mess with them unless you know what you are doing.
This subroutine handles output of the program, it writes the results into a specified file name.
Haktan Suren, <hsuren at cpan.org>
<hsuren at cpan.org>
Please report any bugs or feature requests to bug-tair-genedescriptions at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=TAIR-GeneDescriptions. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
bug-tair-genedescriptions at rt.cpan.org
You can find documentation for this module with the perldoc command.
perldoc TAIR::GeneDescriptions
You can also look for information at:
RT: CPAN's request tracker
http://rt.cpan.org/NoAuth/Bugs.html?Dist=TAIR-GeneDescriptions
AnnoCPAN: Annotated CPAN documentation
http://annocpan.org/dist/TAIR-GeneDescriptions
CPAN Ratings
http://cpanratings.perl.org/d/TAIR-GeneDescriptions
Search CPAN
http://search.cpan.org/dist/TAIR-GeneDescriptions/
LWP::UserAgent HTTP::Request::Common
Special thanks to LC :)
Copyright 2011 Haktan Suren.
This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License.
See http://dev.perl.org/licenses/ for more information.
To install TAIR::GeneDescriptions, copy and paste the appropriate command in to your terminal.
cpanm
cpanm TAIR::GeneDescriptions
CPAN shell
perl -MCPAN -e shell install TAIR::GeneDescriptions
For more information on module installation, please visit the detailed CPAN module installation guide.