#wenn export, dann hier im qw() my $idx = Bio::Grid::Run::SGE::Index::General->new( 'idx_file' => $idx_file, 'sep' => '^>' 'sep_pos' => '^', 'sep_remove' => 1, 'ignore_first_sep' => 1, );
remove the separators between the data records. For sep remove sth. like
<FILE_START> <entry1> <sep> <entry2> <sep> ... <sep> <entryN> <FILE_END>
is expected, so no separator at begin or end of file, otherwise it will break! If you have a separator before the first data record, you can use the ignore_first_sep option to skip over it.
ignore_first_sep
Can be '^' or '$'. '^' corresponds to a file layout
<FILE_START> <sep> <--- NOTE: the first sep <entry1> <sep> <entry2> <sep> ... <sep> <entryN> <--- NOTE: no last sep <FILE_END>
'$' corresponds to a file layout:
<FILE_START> <entry1><--- NOTE: no first sep <sep> <entry2> <sep> ... <sep> <entryN> <sep> <--- NOTE: the last sep <FILE_END>
jw bargsten, <jwb at cpan dot org>
<jwb at cpan dot org>
To install Bio::Grid::Run::SGE, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Grid::Run::SGE
CPAN shell
perl -MCPAN -e shell install Bio::Grid::Run::SGE
For more information on module installation, please visit the detailed CPAN module installation guide.