Bio::Polloc::Rule::profile - A rule of type profile
Email lmrodriguezr at gmail dot com
Methods provided by the package
Generic initialization function
Runs the search using HMMer
The sequence (-seq) as a Bio::Seq object or a Bio::SeqIO object
An array reference populated with Bio::Polloc::Locus::repeat objects
Produces a readable string of the rule's value
Methods intended to be used only within the scope of Bio::Polloc::*
Implements the _qualify_value from the Bio::Polloc::RuleI interface
Value (str or ref-to-hash or ref-to-array). Mandatory arguments are:
Path to the file containing the HMM.
See the documentation of HMMER for detailed description of the arguments mapped by the followin supported keys:
Value (ref-to-hash or undef)
To install Bio::Polloc, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Polloc
CPAN shell
perl -MCPAN -e shell install Bio::Polloc
For more information on module installation, please visit the detailed CPAN module installation guide.