NAME

Bio::LITE::Taxonomy::RDP - Lightweight and efficient RDP taxonomic manager

SYNOPSIS

  use Bio::LITE::Taxonomy::RDP;

  my $taxRDP = Bio::LITE::Taxonomy::RDP->new (
                                              bergeyXML => "/path/to/BergeyTrainingTree.xml",
                                             );

  my  @tax = $taxRDP->get_taxonomy (22075);

  my $level = $taxRDP->get_level_from_name("Bacillaceae 1");

DESCRIPTION

This module provides easy and efficient access to the RDP taxonomy with minimal dependencies and without intermediary databases.

This module is not part of the Bioperl bundle.

SEE ALSO

Bio::Taxonomy

Bio::Taxonomy::NCBI

AUTHOR

Miguel Pignatelli

Any comments or suggestions should be addressed to emepyc@gmail.com

LICENSE

Copyright 2009 Miguel Pignatelli, all rights reserved.

This library is free software; you may redistribute it and/or modify it under the same terms as Perl itself.