Bio::Chado::Schema::Result::Genetic::Genotype
Genetic context. A genotype is defined by a collection of features, mutations, balancers, deficiencies, haplotype blocks, or engineered constructs.
data_type: 'integer' is_auto_increment: 1 is_nullable: 0 sequence: 'genotype_genotype_id_seq'
data_type: 'text' is_nullable: 1
Optional alternative name for a genotype, for display purposes.
data_type: 'text' is_nullable: 0
The unique name for a genotype; typically derived from the features making up the genotype.
data_type: 'varchar' is_nullable: 1 size: 255
data_type: 'integer' is_foreign_key: 1 is_nullable: 0
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::FeatureGenotype
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
Related object: Bio::Chado::Schema::Result::Genetic::Genotypeprop
Related object: Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentGenotype
Related object: Bio::Chado::Schema::Result::Genetic::Phendesc
Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison
Related object: Bio::Chado::Schema::Result::Genetic::Phenstatement
Related object: Bio::Chado::Schema::Result::Stock::StockGenotype
Usage: $set->create_genotypeprops({ baz => 2, foo => 'bar' }); Desc : convenience method to create genotype properties using cvterms from the ontology with the given name Args : hashref of { propname => value, ...}, options hashref as: { autocreate => 0, (optional) boolean, if passed, automatically create cv, cvterm, and dbxref rows if one cannot be found for the given genotypeprop name. Default false. cv_name => cv.name to use for the given genotypeprops. Defaults to 'genotype_property', db_name => db.name to use for autocreated dbxrefs, default 'null', dbxref_accession_prefix => optional, default 'autocreated:', definitions => optional hashref of: { cvterm_name => definition, } to load into the cvterm table when autocreating cvterms rank => force numeric rank. Be careful not to pass ranks that already exist for the property type. The function will die in such case. allow_duplicate_values => default false. If true, allow duplicate instances of the same genotype and value in the properties of the genotype. Duplicate values will have different ranks. } Ret : hashref of { propname => new genotypeprop object }
To install Bio::Chado::Schema, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Chado::Schema
CPAN shell
perl -MCPAN -e shell install Bio::Chado::Schema
For more information on module installation, please visit the detailed CPAN module installation guide.