Term::DNAColor - Add colors to DNA and RNA sequences in terminal output
version 0.110460
use Term::DNAColor; print colordna("ATCGGTCNNNTAGCTGAN"), "\n";
This module provides a function, colordna, that takes a DNA sequence and wraps unambiguous nucleotides in ANSI color codes, so that you can print the sequence to a terminal and have it come out colored.
colordna
Takes a string representing a DNA sequence and adds ANSI color codes to the following nucleotides:
A: green
T: red
C: blue
G: yellow
U is colorized like T, to accomodate RNA sequences.
In addition, the entire sequence is rendered in bold.
This function is exported by default.
This is simply an alias for colordna. Both colordna and colorrna will highlight U for uracil. Unlike colordna, it is not exported by default, but only by request.
colorrna
Colors are not configurable.
Please report any bugs or feature requests to rct+perlbug@thompsonclan.org.
rct+perlbug@thompsonclan.org
Term::ANSIColor - Provides the ANSI color codes for this module
See perlmodinstall for information and options on installing Perl modules.
Ryan C. Thompson <rct@thompsonclan.org>
This software is copyright (c) 2011 by Ryan C. Thompson.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
BECAUSE THIS SOFTWARE IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE SOFTWARE, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE SOFTWARE "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE SOFTWARE IS WITH YOU. SHOULD THE SOFTWARE PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR, OR CORRECTION.
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To install Term::DNAColor, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Term::DNAColor
CPAN shell
perl -MCPAN -e shell install Term::DNAColor
For more information on module installation, please visit the detailed CPAN module installation guide.