Bio::PhyloTastic::TNRS - Taxonomic Name Reconciliation Service
phylotastic TNRS -i <infile> -o <outfile>
This module calls the TNRS service http://api.phylotastic.org/tnrs/
An input file. Default is a text file with one name per line. Required.
An output file name. If '-', prints output to STDOUT. Required.
An input format, including NEXUS, Newick, NeXML, PhyloXML, TaxList. Optional. Default is TaxList (i.e. a simple text file).
An output format, including NeXML, TaxList. Optional. Default is TaxList (i.e. a simple text file).
Number of seconds until user agent times out. Optional. Default is 60.
Number of seconds between polling the TNRS service. Optional. Default is 5.
To install Bio::PhyloTastic, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::PhyloTastic
CPAN shell
perl -MCPAN -e shell install Bio::PhyloTastic
For more information on module installation, please visit the detailed CPAN module installation guide.